Date | Presenter | Seminar Title |
Related Resources |
| 4-28-16 |
Ye Li |
"PubChem: Connected Data and Information on Small Molecules" |
PubChem |
| 4-21-16 |
Becky Steck and Ross Patterson |
"Nephroseq: A gene expression data mining application for kidney disease" |
Nephroseq Website |
| 3-31-16 |
Guanming Wu |
"Reactome Functional Interaction Network and its Application in Cancer Research" |
Reactome Website |
| 3-17-16 |
Sayantan Das |
"Next Generation Imputation Methods" |
Minimac3 |
| 3-3-16 |
Negar Farzaneh and Kayvan Najarian |
"MATLAB and Simulink: Simulation Tools for Scientific Computing" |
Najarian Lab |
| 2-18-16 |
Kevin He |
"Variable selection in survival analysis with high-dimensional covariates" |
|
| 2-11-16 |
Margaret Hedstrom |
"SEAD: Data management, publishing and archiving services" |
SEAD Website |
| 2-4-16 |
Issam El Naqa |
Outcome Modeling In Radiotherapy and Oncology: Listening to the Data |
|
| 1-21-16 |
Chris Gates |
"Three habits to bridge research code and sustainable software" |
Slides (PDF) |
| 1-14-16 |
Adrian Tan |
"vt - a short genetic variant calling and analysis tool" |
vt |
| 12-17-2015 |
Wallace Chan |
"Ligand-Based Virtual Screening for G Protein-Coupled Receptors" |
Zhang Lab/ GLASS |
| 12-10-2015 |
Melissa Duhaime |
"Omics approaches to study the ecology of uncultivated viruses" |
Duhaime Lab |
| 12-3-2015 |
Lada Koneva |
"Identification and characterization of genic HPV integration events in oropharynx and oral cavity tumors" |
The Sartor Lab |
| 11-19-2015 |
Chih-Chiang Tsou |
"DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics" |
Nesvizhkii Lab |
| 11-5-2015 |
Alex Tsoi |
"Identification and interpretation of psoriasis susceptibility loci" |
Web Page |
| 10-29-2015 |
Shashank Jariwala |
"Developing integrated online tools for protein structural dynamics and evolutionary analysis" |
Grant lab |
| 10-22-2015 |
Jun Li, Margit Burmeister |
"Identification of expanded repeat sequences in Illumina NGS exome data from ataxia patients" |
|
| 10-15-2015 |
Nils Walter |
"Using Computational and Bioinformatics Tools to Analyze Single Molecule Fluorescence Data" |
Walter Lab |
| 10-8-2015 |
Jie Wang |
"Sparse Screening for Big Biomedical Data" |
Ye Lab Software |
| 10-1-2015 |
Keqiang Li |
"CoolMap-based visualization and analysis of omics data" |
Coolmap.org |
| 9-24-2015 |
Tony Chun |
"SPECtre: spectral coherence-based classification of actively translated transcripts from ribosome profiling sequence data" |
Mills Lab |
| 9-10-2015 |
Haiming Chen |
"Chromosome conformation capture to interrogate the 3D genome" |
Rajapakse Lab |
| 5-22-2015 |
Hui Jiang |
"Unit-free and robust detection of differential expression from RNA-Seq data" |
Web Site |
| 5-14-2015 |
Rada Mihalcea |
"Multimodal Sentiment Analysis" |
Web Site |
| 5-7-2015 |
Ya Yang |
"Recent development in tools for homology inference, alignment and phylogenetic reconstruction" |
Stephen Smith Lab |
| 4-30-2015 |
Ari Allyn-Feuer |
"EpiGWAS: Moving from association to predicted function on an increasingly automated basis" |
Athey Lab |
| 3-26-2015 |
Damian Fermin |
"LuciPHOr: algorithm for phosphorylation site localization with false localization rate estimation using modified target-decoy approach" |
Nesvizhskii Lab Software |
| 3-19-2015 |
Elsje Pienaar |
"Formulating multi-scale hybrid models to describe M. tuberculosis infection" |
Kirshner Lab |
| 3-12-2015 |
Brian Athey |
"Big Data and Data Science: Hype or Reality" |
Athey Lab |
| 3-5-2015 |
Jacob Kitzman |
"Massively parallel assays for functional interpretation of mutations" (Pending Publication) |
|
| 2-26-2015 |
David Shultis |
"Computational Protein Design" |
Zhang Lab |
| 2-19-2015 |
Alex DaSilva |
"Brain: The Next Frontier in Personalized Pain Medicine and Technology" |
DaSilva Lab |
| 2-12-2015 |
Alex Kalinin |
"#DeepLearning: The End of Machine Learning and Signal Processing" |
|
| 2-5-2015 |
Snehal Patil and Raymond Cavalcante |
"ConceptMetab: Exploring relationships among metabolite sets to identify links among biological concepts" |
|
| 1-29-2015 |
V. G. Vinod Vydiswaran and Yang Liu |
"Mining social media to analyze dissemination of health-related information and concerns" |
|
| 1-22-2015 |
Jungkap Park and Kazuhiro Saitou |
"ROTAS: a rotamer-dependent, atomic statistical potential for assessment and prediction of protein structures" |
ROTAS |
| 1-15-2015 |
Billy Pozehl |
"Linear Programming Tools for Scheduling Trainees in Healthcare" |
|
| 12-11-2014 |
Josh Abramson |
"Synthetic Biology and the iGEM Competition" |
|
| 11-20-2014 |
Oliver He |
"OntoFox and Ontobee: Tools to support ontology reuse, browsing, and integration" |
OntoFox, Ontobee |
| 11-13-2014 |
Bill Duren |
"MetScape: A Multi-Purpose Cytoscape App for Metabolomic Network Analysis" |
MetScape |
| 10-30-2014 |
Ridvan Eksi |
IsoPred : Systematically Differentiating Functions for Alternatively Spliced Isoforms through Integrating RNA-seq Data |
|
| 10-2-2014 |
Brandon Govindarajoo |
Template Based Modeling of Protein Complexes |
|
| 9-25-2014 |
Shuang Feng |
RAREMETAL: fast and powerful meta-analysis for rare variants |
|
| 9-18-2014 |
Jim Cavalcoli |
Update on technology and bioinformatics for small genome resequencing |
|
| 5-29-2014 |
Marci Brandenburg |
An Overview of NCBI Tools |
|
| 5-22-2014 |
Jon Mowers |
Modeling Biological Pathways by Redefining Referencing using PubMow.org |
PubMow |
| 5-8-2014 |
Justin Joque |
Visualization Services and Support in the Library |
|
| 5-1-2014 |
Robert Krasny |
A Treecode-Accelerated Boundary Integral Poisson-Boltzmann Solver for Electrostatics of Solvated Proteins |
|
| 4-3-2014 |
Sivaraj (Shiv) Sivaramakrishnan |
Tethering with an ER/K linker: tuning distance and interactions between proteins |
|
| 3-27-2014 |
Alexander Van Esbroeck |
Computational Prediction of Sudden Cardiac Death following Acute Coronary Syndrome |
|
| 3-20-2014 |
Xuefang Zhao |
Resolving Complex Structural Genomic Rearrangements Using a Randomized Approach |
|
| 3-13-2014 |
Craig Biwer |
An Introduction to Weka: Data Mining Software in Java |
|
| 3-6-2014 |
Aaron Bookvich |
An overview to some of the IT resources available to U-M Medical School staff, students, and faculty |
|
| 2-27-2014 |
Xinqiu Yao |
Nucleotide-dependent Transitions of the α-subunit of Heterotrimeric G-proteins Probed with Multiscale Molecular Simulations |
|
| 2-20-2014 |
Scott Tomlins |
Targeted next generation sequencing of cancer using Ion Torrent technology |
|
| 2-13-2014 |
Kraig Stevenson |
Best practices for quantifying allele-specific expression from RNA-seq data |
|
| 2-6-2014 |
Marcin Cieslik |
Epicode: combinatorial epigenetic patterns as quantitative predictors of chromatin biology |
|
| 1-30-2014 |
Ivo Dinov |
SOCR Infrastructure for Technology-enhanced Trans-disciplinary Health Research & Science Education |
|
| 12-19-2013 |
Yongseok Park |
METHYLSIG: A Whole Genome DNA Methylation Analysis Pipeline |
|
| 12-12-2013 |
Kevin Smith |
News from the tranSMART Foundation: Status of the tranSMART project |
|
| 12-5-2013 |
Jun Li |
Subclone Evolution in Cancer: Data, Models, and Limitations |
|
| 11-21-2013 |
Gang (Gary) Yang |
PubAnatomy 3D: Integrating Medline Exploration with Allen Mouse Brain Atlas |
|
| 11-1-2013 |
Brendan Veeneman |
Integrative analysis of RNAseq and Exome-seq datasets |
|
| 10-24-2013 |
Gang Su |
CoolMap for Multiscale Omics Data Exploration |
|
| 10-17-2013 |
David Sept |
Multisite Ion Models in Molecular Simulations |
|
| 10-3-2013 |
Kai Zheng |
Developing an Intelligent and Socially Oriented Search Query Recommendation Service for Facilitating Information Retrieval in Electronic Health Records |
|
| 9-27-2013 |
Steve Huang |
Aberrant DNA Methylome in Pulmonary Fibrosis and the Role of Endogenous Mediators |
|
| 9-19-2013 |
Chandra Bajaj |
High Resolution Modeling of the HIV-1 Spike Complex |
|
| 9-12-2013 |
Ted Hall |
Biomedical Visualization in the 3D Lab |
|
| 9-5-2013 |
Datta Mellacheruvu and Zach Wright |
Analysis of non-specific interactions in affinity purification mass spectrometry experiments using the CRAPome |
|
| 5-23-2013 |
Weisheng Wu |
A local Galaxy server for bioinformatics data analysis without programming |
|
| 5-2-2013 |
Mallory Freeberg |
A novel pipeline for identifying transcriptome-wide binding sites of RNA-binding protein from PAR-CLIP sequencing data |
|
| 4-25-2013 |
Jeremy Hallum |
Services for Computations and storage for researchers in the Medical School: Update for 2013 |
|
| 4-18-2013 |
Guido Scarabelli |
Dynamical network analysis of kinesin motor domain |
|
| 4-11-2013 |
Dongxiao Zhu |
RNA-seq to Capture Transcriptome Landscape - Methods, Algorithms, and ComputationalTools |
|
| 4-4-2013 |
Jianyi Yang |
BioLiP: a semi-manually curated database for biologically relevant ligand–protein interactions |
|
| 3-28-2013 |
Hui Jiang |
Analyzing RNA-Seq data using rSeq |
|
| 3-21-2013 |
Michelle Wynn |
Using parameter free logic models to investigate network dynamics |
|
| 3-14-2013 |
Terry Weymouth |
Grails a framework for Web-Based application |
|
| 3-7-2013 |
George Michailidis |
Pathway enrichment tools: statistical models and methodological issues |
|
| 2-28-2013 |
Vasudeva Mahavisno |
Developing Mobile applications for bioinformatics |
|
| 2-21-2013 |
Yanxiao Zhang |
PePr: a Peak-calling and Prioritization pipeline to test group differences in ChIP-Seq data |
|
| 2-14-2013 |
Nickolay Khazanov |
Analysis of 3,000 Cancer Exomes to Identify Novel Cancer Drivers and Therapeutic Opportunities |
|
| 2-7-2013 |
Rich McEachin |
The Tuxedo RNA-Seq Analysis Suite |
|
| 1-31-2013 |
Terry Weymouth and Alex Ade |
Tools for software development: Git, the GitHub archive, and Jenkins |
|
| 1-24-2013 |
Ashwini Bhasi and Zach Wright |
Winnow: A tool to filter and prioritize NGS datasets to extract user-specific results |
|
| 1-17-2013 |
Mark Reppell |
Incorporating faster than exponential population growth into the coalescent using FTEC |
|
| 12-20-2012 |
Hyun Min Kang |
Genomes on the Cloud: A scalable pipeline from raw sequence data to complex disease mapping |
|
| 12-13-2012 |
Chao-Yie Yang |
Evaluation and identification of potential small molecule binding sites at protein-protein interaction interface |
|
| 12-6-2012 |
Stephen Smith |
Next generation phylogenetics: emerging technologies and techniques
for non model organisms |
|
| 11-29-2012 |
Willy Wriggers |
Situs and Sculptor: Next Generation Tools for the Computational Interpretation of 3D Electron Microscopy and Tomography Data |
|
| 11-16-2012 |
Bob Lyons |
How to Keep Up in Genomics |
|
| 10-25-2012 |
Ulysses Balis |
Ephemeral Images, Indelible Data: The Promises and Challenges of Digital Imaging as Applied to Pathology |
|
| 10-18-2012 |
Cody Sheik |
Application of meta'omics to understand the microbiology of the deep-sea |
|
| 9-27-2012 |
Gang Su |
Tools for Network Analysis Roundup |
|
| 9-20-2012 |
Terry Weymouth, Brian Athey |
tranSMART |
|
| 9-13-2012 |
Alla Karnovsky |
Connecting metabolites to diseases |
|
| 9-6-2012 |
Matthew Iyer |
High-throughput RNA sequencing to comprehensively annotate the human cancer transcriptome |
|
| 5-10-12 |
Patrick Schloss |
Next generation sequencing and microbial ecology |
|
| 5-3-12 |
Curt Bagne |
Causality Assessment with Multiple Time Series Data (slides in PDF) (final annotated slides in PDF) |
|
| 4-26-12 |
Yongsheng Bai |
SNPAAMapper: an efficient genome-wide SNP variant analysis pipeline for next-generation sequencing data |
|
| 3-22-2012 |
Alfred Hero |
Biomarker discovery for predicting health and disease |
|
| 3-15-2012 |
Jeremy Hallum |
Flux: a computational tool for research at the University of Michigan |
|
| 3-8-2012 |
Barry Grant |
The Bio3D package for comparative analysis of protein sequence, structure and dynamics |
|
| 3-1-2012 |
Ryan Welch |
ChipEnrich: gene set enrichment for ChIP-seq data |
|
| 2-23-2012 |
Sira Sarntivijai |
Cell Line Ontology and the collaboration to move towards translational informatics |
|
| 2-16-2012 |
Datta Mellacheruvu and Zach Wright |
Building and Using Contaminant Repositories for Scoring Protein-Protein Interactions |
|
| 2-9-2012 |
Julie (Jung) Kim |
LRpath analysis reveals common pathways dysregulated via DNA methylation across cancer types |
|
| 2-2-2012 |
Yuanfang Guan |
Exploring on-line functional networks |
|
| 12-15-2011 |
Patrick Nelson |
Translating Glucose Variability Metrics into the Clinic via a Continuous Glucose Monitoring Graphical User Interface for Diabetes Evaluation (CGM-GUIDE) |
|
| 12-8-2011 |
Hui Jiang |
Read alignment for the next generation |
|
| 11-17-2011 |
Lior Shamir |
Bioimage Informatics: An emerging area of BioEngineering |
|
| 11-10-2011 |
David Hanauer |
Issues and Approaches for using Time and Motion Methods to Study Workflow in Health IT |
|
| 10-27-2011 |
Christoph Jacob |
Validation of Gene Ontology mapping results |
|
| 10-20-2011 |
Srayanta Mukherjee |
TACOS: Template based assembly of complex structures |
|
| 10-13-2011 |
Manhong Dai |
The MBNI Cloud+: Secure high performance biomedical computing through a cost effective co-op model |
|
| 10-6-2011 |
Ye Li |
Structure-based search for small molecules in biomedical research |
|
| 8-25-2011 |
Jim Cavalcoli, Yongsheng Bai, Yu-Hsuan Lin |
ISMB 2011 - Recap |
|
| 6-9-2011 |
Marci Brandenburg |
Exploring bioDBnet: A Database for Converting Between Database Identifiers |
|
| 6-2-2011 |
Aaron Bookvich and Zach Wright |
Building Websites and Custom Applications in Drupal |
|
| 5-26-2011 |
Susan Dombrowski |
Uncovering the Biology in Your Data with Genomatix Software |
|
| 3-31-2011 |
Debprakash Patnaik |
Discovering Excitatory Networks from Discrete Event Streams with Applications to Neuronal Spike Train Analysis |
|
| 1-20-2011 |
Sebastian Martini |
Functional genomic based hypothesis generation through combination of transcriptional modeling and pathway analysis in diabetic nephropathy |
|
| 1-13-2011 |
Gil Omenn |
The Emerging Global Human Proteome Project (HPP) |
|
| 11-18-2010 |
Alex Ade, Glenn Tarcea, and Zach Wright |
NCIBI Web Services - The Next Generation |
|
| 11-11-2010 |
Eric Shah |
A Synergistic Collaboration Between MiMI Molecular Interactions and Drug Path Oncology Pharma Pipeline Database |
|
| 10-28-2010 |
Alla Karnovsky, Terry Weymouth, Tim Hull, Glenn Tarcea |
Linking Genes and Metabolites with Metscape 2.0 |
|
| 09-30-2010 |
Zhenjun Hu |
Integration of VisANT and NCIBI Tools |
|
| 09-23-2010 |
Raphael Isokpehi |
Functional Annotation Analytics of Gene Families |
|
| 09-16-2010 |
Yongsheng Bai |
Illumina Genome Analyzer Pipeline & CASAVA |
|
| 09-10-2010 |
Rich McEachin |
Chip-Seq assessment of Growth Hormone Response via STAT and BCL transcription factor binding |
|
| 06-10-10 | Jen Steiner-Tonks | What Can Usability Tell Us About Interdisciplinarity?
|
|
| 06-03-10 | Jing Zhang | Tracing Provenance of MiMI Data
|
|
| 05-27-10 | Anna Shaverdian | Algebra basis for biological network analysis
|
|
| 05-20-10 | Sirarat Sarntivijai | NCIBI tools to translate clinical data to bioinformatics practice: a case study of Influenza vaccine adverse events
|
|
| 05-13-10 | Marcio Mourao | MIKANA: Method for the Inference of Kinetics And Network Architecture
|
|
| 04-29-10 | Andrew Hodges | Edge Clipper: A Computational Algorithm For Bayesian Consensus Network Refinement
|
|
| 04-08-10 | Gang Su | Identification of Significant Metabolic Fingerprints in NCI-60 Dataset
|
|
| 03-26-10 | Arzucan Ozgur | Biomedical Information Extraction and Literature-based Discovery
|
|
| 03-18-10 | Glenn Tarcea | MiMI Data Pipeline Load, merge & display Gene, Interactions & Metabolomics data at NCIBI
|
|
| 03-04-10 | Beth Kirschner | Biositemaps - the CIRWP Explorer and the Editor
|
|
| 02-25-10 | Rich McEachin | Lithium in Bipolar Disorder
|
|
| 02-04-10 | Alex Ade | Using Web Services to Access NCIBI Data
|
|
| 01-21-10 | Tolulola Oyeleye | Automatic classification of bioinformatics abstract text
|
|
| 12-10-09 | Chris Maher | Analysis of Next Generation transcriptome sequencing to detect chimeric transcripts
|
|
| 11-11-09 | Weijian Xuan | PubAnatomy: Integrated Exploration of Biomedical Literature and Data in the Context of Mouse Brain Anatomy
|
|
| 11-05-09 | Josh Buckner | "A gpu enabled package for the R statistical environment"
|
|
| 10-08-09 | Matt Huyck | "An Overview of VisANT and a Peek Inside"
|
|
| 10-01-09 | Tolulola Oyeleye | Bioinformatics Tools Categorizer
|
|
| 09-17-09 | Alla Karnovsky | Overview of the Tools for Visualization and Analysis of Biological Networks Containing Experimental Data
|
|
| 08-27-09 | Aaron Bookvich | The NCIBI Portal: Highlights and Features
|
|
| 08-20-09 | Jing Zhang | Tracing Provenance of MiMI Data
|
|
| 08-13-09 | Yuehua Cui | Identifying novel pathway regulators in eQTL mapping: a systems biology approach
Identifying novel pathway regulators in eQTL mapping: a systems biology approac
|
|
| 07-23-09 | Anna Shaverdian | A Network Based Pattern Matching Approach to Protein Function Prediction |
|
| 06-18-09 | Abhik Shah | "anyCloud: python library to run code on a variety of grids and cloud computing platforms"
|
|
| 06-11-09 | Sirarat Sarntivijai | "Ontology Integration in the Framework of Translational Informatics"
|
|
| 06-04-09 | Haiming Chen | Functional analysis of gene expression data in bipolar disorder
|
|
| 05-21-09 | Gang Su | Robust Estimation of Correlation between Metabolomics and Transcriptomics data
|
|
| 05-07-09 | Jim Cavalcoli | Genomic Resequencing using Illumina Technology
Genomic Resequencing using Illumina Technology (Next-Gen Sequencing)
|
|
| 04-16-09 | Arzucan Ozgur | Biomedical Information Extraction using Text Mining and Network Analysis Methods
|
|
| 04-09-09 | Beth Kirschner | "Biositemaps: what, why and how to use them"
|
|
| 04-02-09 | Ben Keller | Molecular Psychiatry: It's not all downhill (Conference Report)
|
|
| 03-19-09 | Kay Robbins | Browsing large scale microarray data sets
|
|
| 03-12-09 | Xiaosong Wang, Maureen Sartor | M-score statistics
|
|
| 03-05-09 | Yongsheng Bai | Uncovering Genetic Factors Contributing to Type 2 Diabetes an
Diabetic Nephropathy
|
|
| 02-26-09 | Weijian Xuan | Cross Internet Application Integration
|
|
| 01-22-09 | Rich McEachin | Comorbid Bipolar Disorder with Nicotine Addiction
|
|
| 12-04-08 | Mor Peleg | Using the BioWorkflow model to represent and reason with biological systems
|
|
| 11-20-08 | Marci Brandenburg | Life and Times of the Laptop Librarian
|
|
| 11-05-08 | Maureen Sartor, Vasu Mahavishnu | Conceptgen: A concept mapping and gene annotation tool
|
|
| 10-30-08 | Qiang Tian | Loss of N-myc downstream-regulated gene 1 (NDRG1) increases prostate cancer cell invasion by upregulating CCL5
|
|
| 10-23-08 | Sharon Lewis | Molecular Genetic Analysis of COMT in Bipolar Disorder
|
|
| 10-16-08 | Wayne Wilson | Storage trends and Medical School Information Systems response
|
|
| 08-28-08 | Manhong Dai, Tyler Brubaker, Walter Meixner | High performance computing with the Depression Center-NCIBI cluster
|
|
| 08-22-08 | Jim Cavalcoli | Technology Basics: Nucleic Acid Hybridization and Sequencing Methods
|
|
| 06-25-08 | Lisa Allred, David Hanauer | The Electronic Medical Record Search Engine (EMERSE)
|
|
| 06-05-08 | Santiago Schnell | XPP/AUTO: A tool for solving differential equations in computational biology
|
|
| 05-29-08 | Jean Song, Marisa Conte | MiSearch Evaluation: Pilot Usability Test
|
|
| 05-22-08 | Vince Chmielewski | Enhancing the NCIBI Development Process with JIRA: Bug tracking, issue tracking and project management software
|
|
| 03-14-08 | Mark Iwen | Scalable Rule-Based Gene Expression Data Classification
|
|
| 03-06-08 | Manhong Dai, Justin Wilson | CPU and Storage Clustering for Common Bioinformatics Problems
|
|
| 02-28-08 | David States | MiMI R2
|
|
| 02-21-08 | Jim Cavalcoli | MBI-NextGen: Data Warehouse for NCIBI
|
|
| 02-07-08 | Terry Weymouth | NCIBI Tools: Overall Architecture
|
|
| 01-31-08 | Alex Ade | NLP with Pubmed Central and Full Text Databases
|
|
| 01-17-08 | Glenn Tarcea | MiMI Data Build and Merge Process
|
|
| 12-20-07 | Molly Kleinman | Copyright Essentials for NCIBI
|
|
| 12-13-07 | Jun Li | Next Generation Sequencing: Principle, Application and Challenge
|
|
| 11-29-07 | Jing Gao | Cytoscape MiMI Plugin
|
|
| 11-15-07 | Elvis Jakupovic | Comparative Analysis of Abstracts from the Society for Neuroscience Meetings and Medline: Trends and Fun Facts
|
|
| 11-08-07 | Dave Strenski | Supercomputing using FPGA
|
|
| 10-25-07 | Fan Meng | In silico evaluation of Knowledge-based data analysis results
|
|
| 10-18-07 | Steve Qin | Literature-based distance measure reflects relationship among genes
|
|
| 10-11-07 | Fan Meng | FunctionScore: a flexible frame work for knowledge-based high throughput data analysis
|
|
| 10-04-07 | Abhik Shah | Bubble and Bayesian Networks in Biology
|
|
| 09-27-07 | Maureen Sartor | Improvements in genome-wide Microarray analysis and an application to ChIP-chip (chromatin immunoprecipitation on chip) data |
|
| 09-20-07 | Ben Keller | Revisiting Genetic Influences
|
|
| 09-13-07 | Axel Mosig | Reading the Genome between the Lines: Homology Search based non-coding RNA gene finding
|
|
| 09-06-07 | Naren Ramakrishnan | Compositional Mining of Multi-Relational Biological Datasets
|
|
| 08-23-07 | Tim Wiggin, Kelli Sullivan | Mouse Models of Diabetic Complications
|
|
| 08-16-07 | Tim Wiggin, Kelli Sullivan | Microarray Analysis of a Large Tissue Bank of Human Sural Nerves
|
|
| 08-09-07 | Jim Cavalcoli | Recap of 15th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB)
|
|
| 07-26-07 | Sandeep Tata | Periscope/SQ: Declarative Querying on Biological Sequence Databases
|
|
| 07-19-07 | Jignesh Patel | SAGA and TALE update: NCIBI Graph Analysis Tools
|
|
| 07-12-07 | Andrea Califano | Cancer DBP Presentations NCIBI and MAGNET
|
|
| 07-05-07 | Rich McEachin | Prioritizing Disease Genes by Analysis of Common Elements (PDG-ACE)
|
|
| 06-28-07 | Steve Qin | Flexible model-based clustering of gene expression microarray data using Chinese restaurant process
|
|
| 06-21-07 | Oliver He | Web-based bioinformatics systems for study of pathogen-host interactions
|
|
| 05-24-07 | Ben Keller | Recommendation within the Resourceome
|
|
| 05-17-07 | Jim Cavalcoli | Survey of External Tools and Databases for use with NCIBI
|
|
| 05-10-07 | Terry Weymouth, Tim Wiggin | GenePattern applications and integration in NCIBI
|
|
| 04-26-07 | Kai Zheng | User Interface Optimization for an Electronic Medical Record System
|
|
| 04-19-07 | Xiaosong Wang | From identification of a novel urine marker for bladder cancer to construction of human potential cancer targets database
|
|
| 04-12-07 | Barry Smith | The OBO Foundry: Towards Gold Standard Terminology Resources in the Biomedical Domain |
|
| 04-05-07 | Manhong Dai, Justin Wilson, Elvis Jakupovic | Supercomputing with Toys
|
|
| 03-29-07 | Weijian Xuan | PubViz: A Graphic Search Engine of Medline Database
|
|
| 03-22-07 | Beth Kirschner | NCIBI Portal Workshop
|
|
| 03-15-07 | Ben Keller | Strategies for Finding Genetic Interactions in Complex Disease
|
|
| 03-08-07 | Elvis Jakupovic, Bohua Yu | A RDF database for community-wide biomedical knowledge capture, integration and mining
|
|
| 03-01-07 | Michael Reich | GenePattern 3.0 Preview
|
|
| 02-22-07 | Robert Murphy | Image Data Integration
|
|
| 02-15-07 | Sirarat Sarntivijai | An Ontology Describing Cell Lines
|
|
| 02-08-07 | You Jung Kim | Follow up and next generation MiBLAST
|
|
| 02-01-07 | Junguk Hur | Defining Reactive Oxidant Genes
|
|
| 01-25-07 | Doug Hockstad | Overview of Technology Transfer
|
|
| 01-18-07 | Bohua Yu, Cong Yu | Database Schema Summarization
|
|
| 01-11-07 | Abhik Shah | Bayesian Networks
|
|
| 01-04-07 | Terry Weymouth | MiMI
|
|
| 12-14-06 | Celine Berthier | Gene Expression Regulation in Renal Disease
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| 12-07-06 | Carlos Santos | NLP Resources at the NCIBI - Data Resources and Corpus Summarization
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| 11-30-06 | Jim Ottaviani | Deep Blue
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| 11-16-06 | Chris Mungall | Chado Database
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| 11-09-06 | Alex Ade | Semantic Integration of NLP
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| 10-26-06 | David States | Pathways and Microarrays GSEA <> ExpBlast
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| 10-19-06 | Manhong Dai | Web-based GeneChip Analysis System
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| 10-12-06 | Damian Fermin | Whole genome proteomics
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| 10-05-06 | Anthony Fader | Language processing, information retrieval, and summarization using clairlib
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| 09-28-06 | Beth Kirschner | The Sakai Product, A Collaboration and Learning Environment
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| 09-07-06 | Arvind Rao | Computational Tools for Understanding Transcriptional Regulation
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| 07-13-06 | Terry Weymouth | The Design of a geWorkbench Module
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| 07-05-06 | Barbara Mirel | Interactive Visualizations, Re-envisioning Users' Exploratory Analysis
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| 06-29-06 | Terry Weymouth | Building a module in GenePattern
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| 06-22-06 | Anne Jackson | Potential uses of SNP annotation in the analysis of genome-wide association data from the FUSION type 2 diabetes study
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| 06-15-06 | Aaron Bookvich | An Introduction to Plone & The NCIBI Collaboration Sites
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| 05-25-06 | Andy Caird | A brief introduction to the Center for Advanced Computing
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| 05-18-06 | Mark Musen | Biomedical Ontology
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| 05-11-06 | Michael Reich | Genomic Analysis and Reproducible Research with GenePattern
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| 05-04-06 | Damian Fermin | Genome Search for Novel ORFs Using the HUPO PPP Data
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| 04-20-06 | Aris Floratos | geWorkbench
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| 04-13-06 | Rich McEachin | Understanding Genetic Influences on Susceptibility to Bipolar Disorder
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| 04-06-06 | You Jung Kim | miBLAST, Scalable evaluation of a batch of nucleotide sequence queries with BLAST
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| 03-30-06 | Rich McEachin | GeneGo
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| 03-23-06 | Inna Dubchak | VISTA
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| 03-16-06 | Glenn Tarcea | MiMI, A Biological Data Warehouse on a native-XML Database
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| 03-09-06 | David States | NCBI, OMIM and web resources for bioinformatics
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| 02-16-06 | Aaron Elkiss | Extensible Information Retrieval with Apache Nutch
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| 02-09-06 | Dragomir Radev | NLP/IR Tools Developed at the CLAIR Lab
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| 02-02-06 | Weijian Xuan | Automated Extraction of Genetic Marker Information from Biomedical Literature
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| 01-26-06 | Carlos Santos | NLP in Biomedicine
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| 01-19-06 | Yuanyuan Tian | SAGA, A fast and flexible graph matching tool
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| 12-15-05 | Terry Weymouth | Kepler Workflow System
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| 12-08-05 | Sirarat Sarntivijai | Gene Pattern
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| 12-01-05 | Jeremy Phillips | Molecular Biology Integration Database
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| 01-12-05 | Dan Rhodes | Oncomine
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